Door alignment help

[asolde]

I had my inner kick pnl patched, lwr A pillar patched,inner rocker pnl patched,part of the floor pan patched, floor support on the drivers side patched and replaced the outer rocker panels. I had this done to both sides with the drivers side getting most of the work. I had all this work done at body shop and I kept a close eye on it while it was being done and felt pretty good about the work, but dissapointed about it now.

I have two problems right now. The first problem is on both sides the lower hinge on the A pillar have one bolt spinning out of the three. I am not sure what the fix will be for this so any advice would be helpful. What ever the repair is I don't think it's going to be simple.

My second problem is the doors are way out of aligment with the passenger side being the worst one. I have purchased a door hinge wrench off of ebay to be able to get at the bolts with the fenders installed.

Here's a few pictures showing the door aligment and one showing the bolts that are spinning