Patch fitment

[chev3600]

This seems easy at first, but maybe I'm missing something. I bought this truck as you see it, as someone elses project. I cant figure out what is going on with the rocker fitment. I can tell that the lower hinge pocket was mounted too high based on the hinge spacing to the door and the outer skin would fit better with the pocket lower. but the where it welds to the floor looks almost ok.
The rear of the rocker is a similar story. Probably shouldnt has a big hole in there. see pic. All this because it seems that the door hangs about .5 lower than the rocker.
http://i260.photobucket.com/albums/i...s/P1170971.jpg
http://i260.photobucket.com/albums/i...s/P1170977.jpg
Any ideas on an easy way to fix this? I'd like not to have to remove all of this. Thanks!
First time posting pics. hope they work